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Last updated 19 July 2024.

(* denotes undergraduate advisee; denotes Loyola student †)

2024

46. Siddiqui^†, R., S. Swank^†, A. Ozark^†, F. Joaquin, M.P. Travis, C.D. McMahan, M.A. Bell, and Y.E. Stuart. 2024. Inferring the evolution of reproductive isolation in a lineage of fossil threespine stickleback, Gasterosteus doryssus. Proceedings of the Royal Society B 20240337. 10.1098/rspb.2024.0337

45. Cerasoni, J.N., M.A. Bell, and Y.E. Stuart. 2024. Geology, microstratigraphy, and paleontology of Truckee Formation lacustrine diatomite deposits near Hazen, Nevada, USA, with emphasis on fossil stickleback fish. Paleobios 41: 1-15. 10.5070/P941161500

44. De Lisle, S.P., D.I. Bolnick, and Y.E. Stuart. Accepted. Predictable and divergent change in the multivariate P-matrix during parallel adaptation. The American Naturalist 204. 10.1086/730261

Myrold, A.^†, M.A. Bell, and Y.E. Stuart. In Prep. An adaptive walk by the fossil stickleback fish Gasterosteus doryssus partly conforms to Fisher’s geometric model of adaptation. for J. Paleontology

Martin^†, M.V., K. Van Dame^††, S. Ryan^†, and Y.E. Stuart. In revision. Determining homing abilities of nesting male threespine stickleback. Bios.

Carmak^†, C., M. Vosburgh^††, Y.E. Stuart, and J.R. Milanovich. In revision. The impacts of glyphosate and common co-formulations with surfactant and dye on American Toad fitness. Ichthyology and Herpetology.

2023

43. Cerasoni, J.N., M.C. O’Toole^†, R. Patel^†, and Y.E. Stuart. 2023. Miocene phytolith and diatom dataset from 10.3Myo diatomite formation, Fernley, Nevada, USA. Data In Brief 50: 109519. 10.1016/j.dib.2023.109519

42. Poore, H.A., Y.E. Stuart, D.J. Rennison, M. Roesti, A.P. Hendry, D.I. Bolnick, and C.L. Peichel. 2023. Repeated genetic divergence plays a minor role in repeated phenotypic divergence of lake-stream stickleback. Evolution 77: 110-122. 10.1093/evolut/qpac025

41. Crawford, D.L., al. et Y.E. Stuart and M.F. Oleksiak. 2023. The genomics of character displacement. Evolution 77: 1175-1187. 10.1093/evolut/qpad031.

40. Stuart, Y.E. 2023. Evolutionary justice. Nature Ecology & Evolution. 10.1038/s41559-022-01955-0.

2022

39. Roesti, M., J. Groh, S. Blain, M. Huss, P. Rassias, D.I. Bolnick, Y.E. Stuart, C.L. Peichel, and D. Schluter. 2022. Species divergence under competition and shared predation. Ecology Letters 26: 111-123. 10.1111/ele.14138

38. Voje, K.L., M.A. Bell, and Y.E. Stuart. 2022. Evolution of static allometry and constraint on evolutionary allometry in a fossil stickleback. J. Evolutionary Biology. 10.1111/jeb.13984

37. Galligan, B.P.^†, Y.E. Stuart, M.C. McManus, and H.E. Stoffel. 2022. Hypoxia-induced predation refuge for northern quahogs (Mercenaria mercenaria) in a temperate estuary. Estuarine, Coastal and Shelf Science 265: 107732. 10.1016/j.ecss.2021.107732

36. Swank, S.^†, E. Elazegui^†, S. Janidlo^†, T.J. Sanger, M.A. Bell, and Y.E. Stuart. 2022. Attempting genetic inference from directional asymmetry during convergent hindlimb reduction in squamates. Ecology and Evolution 12: e9088. 10.1002/ece3.9088

2021

35. Stuart, Y.E., J.W. Sherwin*, A. Kamath, and T. Veen. 2021. Male and female Anolis carolinensis maintain their dimorphism despite the presence of novel interspecific competition. Evolution. 10.1111/evo.14349

34. Swank, S.^†, T.J. Sanger, and Y.E. Stuart. 2021. (Non)parallel molecular pathways to vertebrate appendage reduction. Ecology and Evolution 11: 15484-15497. 10.1002/ece3.8226

33. Ishikawa, A., Y.E. Stuart, D.I. Bolnick, and J. Kitano. 2021. Copy number variation of a fatty acid desaturase gene Fads2 associated with ecological divergence in freshwater stickleback populations. Biology Letters 17. 10.1098/rsbl.2021.0204

2020

32. Stuart, Y.E., M.P. Travis, and M.A. Bell. 2020. Inferred genetic architecture underlying evolution in a fossil stickleback lineage. Nature Ecology and Evolution 4: 1549-1557. 10.1038/s41559-020-01287-x, pdf, BehindThePaper

31. Kamath, A., N.C. Herrmann, K. Gotanda, K.C. Shim, J. LaFond, G. Cottone†, H. Falkner, T.S. Campbell, and Y.E. Stuart. 2020. Repeated character displacement in the midst of background evolution in island populations of Anolis lizards. Evolution 74: 2250-2264. 10.1111/evo.14079

30. Bolnick, D.I., E.J. Resetarits, K. Ballare, Y.E. Stuart, W.E. Stutz. 2020. Scale-dependent effects of host patch traits on species composition in a stickleback parasite metacommunity. Ecology 101: e03181. 10.1002/ecy.3181

29. Paccard, A., D. Hanson, Y.E. Stuart, F.A. von Hippel, M. Kalbe, T. Klepaker, S. Skúlason, B.K. Kristjánsson, D.I. Bolnick, A.P. Hendry, and R.D.H. Barrett. 2020. Repeatability of adaptive radiation depends on spatial scale: regional versus global replicates of stickleback in lake versus stream habitats. J. Heredity 111: 43-56. 10.1093/jhered/esz056

28. Bolnick, D.I., E.J. Resetarits, K. Ballare, Y.E. Stuart, W.E. Stutz. 2020. Host patch traits have scale-dependent effects on diversity in a stickleback parasite metacommunity. Ecography 43: 990-1002. 10.1111/ecog.04994.

27. Maciejewski, M, C. Jiang, Y.E. Stuart, and D.I. Bolnick. 2020. Microhabitat contributes to microgeographic divergence in threespine stickleback. Evolution 74: 749-763. 10.1111/evo.13942

26. Haines, G., Y.E. Stuart, D. Hanson, T. Tasneem, D.I. Bolnick, H.C.E. Larsson, and A.P. Hendry. 2020. Adding the third dimension to parallel evolution of morphology and function: an exploration based on parapatric lake-stream stickleback. Ecology and Evolution. 10.1002/ece3.6929

2019

25. Stuart, Y.E. 2019. Divergent uses of ‘parallel evolution’ during the history of The American Naturalist. American Naturalist, 193: 11-19. 10.1086/700718.

24. Rennison, D.J., Y.E. Stuart, D.I. Bolnick, and C.L. Peichel. 2019. Ecological factors and morphological traits are associated with repeated genomic differentiation between lake and stream stickleback. Philosophical Transactions of the Royal Society B, 374: 20180241. 10.1098/rstb.2018.0241.

2018
23. Bolnick, D.I., R.D.H. Barrett, K.B. Oke, D.J. Rennison, and Y.E. Stuart. 2018. (Non)Parallel Evolution. Annual Reviews of Ecology, Evolution, and Systematics, 49: 303-330. 10.1146/annurev-ecolsys-110617-062240. [pdf]

2017
22. Stuart, Y.E., T. Veen, J.N. Weber, D. Hanson, M. Ravinet, B.K. Lohman, *C.J. Thompson, T. Tasneem, A. Doggett, *R. Izen, *N. Ahmed, R.D.H. Barrett, A.P. Hendry, C.L. Peichel, and D.I. Bolnick. 2017. Contrasting effects of environment and genetics generate a continuum of parallel evolution. Nature Ecology and Evolution, 1: 0158. 10.1038/s41559-017-0158. [pdf, blogpost]

21. *Thompson, C.J., *N.I. Ahmed, T. Veen, C.L. Peichel, A.P. Hendry, D.I. Bolnick, and Y.E. Stuart. 2017. Many-to-one form-to-function mapping weakens parallel morphological evolution. Evolution, 71: 2738-2749. 10.1111/evo.13357.

20. Stuart, Y.E., S.A. Inkpen, R. Hopkins, and D.I. Bolnick. 2017b. Character displacement is an evolutionary pattern. So, what causes it? Biological. Journal of the Linnean Society, 121: 711-715. 10.1093/biolinnean/blx013. [pdf]

19. Kolbe, J.J., J. Wegener, Y.E. Stuart, U. Milstead, K. Boronow, A. Harrison, & J.B. Losos. 2017. An incipient invasion of brown anole lizards (Anolis sagrei) into their own native range in the Cayman Islands – a case of cryptic back-introduction. Biological Invasions, 19: 1989-1998. 10.1007/s10530-017-1432-2. [pdf]

18. Weber, J.N., G. Bradburd, Y.E. Stuart, W. E. Stutz, and D.I. Bolnick. 2017. Partitioning the effects of isolation by distance, environment, and physical barriers on genomic divergence between parapatric threespine stickleback. Evolution, 71: 342-356. 10.1111/evo.13110. [pdf]

17. *Ahmed, N.I., *C.J. Thompson, D.I. Bolnick, and Y.E. Stuart. 2017. Brain morphology of the threespine stickleback (Gasterosteus aculeatus) varies inconsistently with respect to habitat complexity: a test of the clever foraging hypothesis. Ecology and Evolution, 7: 3372-3380. 10.1002/ece3.2918. [pdf]

2016
16. Ingram, T., A. Harrison, D.L. Mahler, M.R. Castañeda, R.E. Glor, A. Herrel, Y.E. Stuart, and J.B. Losos. 2016. Comparative tests of the role of dewlap size in Anolis lizard speciation. Proceedings of the Royal Society B, 283: 20162199. 10.1098/rspb.2016.2199. [pdf]

15. *Izen, R., Y.E. Stuart, Y. Jiang, and D.I. Bolnick. 2016. Coarse- and fine-grained phenotypic divergence in threespine stickleback from alternating lake and stream habitats. Evolutionary Ecology Research, 17: 437:457. [link, pdf]

14. Mohammadi, A, M. Kaboli, S. Ashrafi, M. Mofidi-Neyestanak , Y. Masoud, A. Rezaei, and Y.E. Stuart. 2016. Trophic niche partitioning between two rock nuthatches (Sitta tephronota & Sitta neumayer) in a contact zone in Iran. Journal of Zoology, 299: 116-124. 10.1111/jzo.12329. [pdf]

13. Clark, G., J. Russell, P. Enyeart, B. Gracia, A. Wessel, I. Jarmoskaite, D. Polioudakis, Y. Stuart, T. Gonzalez, A. MacKrell, S. Rodenbusch, G. Stovall, J.T. Beckam, M. Mongomery, T. Tasneem, J. Jones, S. Simmons, and S. Roux. 2016. Science educational outreach programs that benefit students and scientists. PLOS Biology, 14: e1002368. 10.1371/journal.pbio.1002368. [pdf]

12. Dawson, M.N., A.C. Algar, L.R. Heaney, and Y.E. Stuart. 2016. Biogeography of Islands, Lakes, and Mountaintops; Evolutionary. In The Encyclopedia of Evolutionary Biology. vol. 1, pp. 203-210. Kliman, R.M. (ed). Oxford: Academic Press.

2015
11. Stuart, Y.E. 2015. Depredación de un polluelo de Tityra Carirroja (Tityra semifasciata) por el Tucán Pico Negro (Ramphostos ambiguus). Zeledonia, 19: 37-38. [link, pdf]

10. Klaczko, J., and Y.E. Stuart. 2015. Hemipenial allometry in Anolis grahami. Journal of Herpetology, 49: 462-467. 10.1670/13-152. [pdf]

9. *Kamath, A., and Y.E. Stuart. 2015. Movement rates of the lizard Anolis carolinensis (Squamata: Dactyloidae) in the presence and absence of Anolis sagrei (Squamata, Dactyloidae). Breviora, 546: 1-7. 10.3099/0006-9698-546.00.1. [pdf]

2014
8. Stuart, Y.E., T.S. Campbell, P.A. Hohenlohe, R.G. Reynolds, L.J. Revell, and J.B. Losos. 2014. Rapid evolution of a native species following invasion by a congener. Science, 346: 463-466. 10.1126/science.1257008. [pdf, blogpost]

2013
7. Stuart, Y.E. and J.B. Losos. 2013. Ecological character displacement: glass half full or half empty? Trends in Ecology and Evolution, 28: 402-408. 10.1016/j.tree.2013.02.014. [pdf]

6. Stuart, Y.E., D. Bolnick, and R. Hopkins. 2013. The unifying wedge. Evolution. [Book review of Evolution’s Wedge, by D.W. Pfennig and K.S. Pfennig.] 10.1111/evo.12282. [pdf]

5. *Kamath A., Y.E. Stuart, and T. S. Campbell. 2013. Behavioral partitioning by the native lizard Anolis carolinensis in the presence and absence of the invasive Anolis sagrei in Florida. Breviora, 535: 1-10. 10.3099/MCZ8.1. [pdf]

2012
4. Stuart, Y.E., J.B. Losos, and A.C. Algar. 2012. The island-mainland species turnover relationship. Proceedings of the Royal Society of London B, 279: 4071-4077. 10.1098/rspb.2012.0816. [pdf, ScienceNow, data]

3. Stuart, Y.E., N. Dappen, and N. Losin. 2012. Inferring predator behavior from attack rates on prey-replicas that differ in conspicuousness. PLoS ONE 7: e48497. 10.1371/journal.pone.0048497. [pdf]

2. Stuart, Y.E., M.A. Landestoy, D.L. Mahler, D. Scantlebury, A.J. Geneva, P.S. VanMiddlesworth*, and R.E. Glor. 2012. Two new introduced populations of Anolis porcatus in the Dominican Republic. IRCF Reptiles & Amphibians: Conservation and Natural History, 19: 71-75. [link]

2010
1. Dawson, M. N., R.K. Grosberg, Y.E. Stuart, and E. Sanford. 2010. Population genetic analysis of a recent range expansion: mechanisms regulating the poleward range limit in the volcano barnacle Tetraclita rubescens. Molecular Ecology, 19: 1585-1605. 10.1111/j.1365-294X.2010.04588.x. [pdf]